Listed below are the final championship standings for the 2006 MotoGP season. Nicky Hayden was crowned Champion for Repsol with a total of 252 points and 2 race victories, with Valentino Rossi claiming the runner-up spot as Loris Capirossi, Marco Melandri and Dani Pedrosa completed the top five.
| Pos. | Points | |
|---|---|---|
| 1. |  Nicky HaydenRepsol | 252 |
| 2. | Valentino RossiYamaha | 247 |
| 3. | Loris CapirossiDucati | 229 |
| 4. | Marco MelandriHonda Gresini | 228 |
| 5. | Dani PedrosaRepsol | 219 |
| 6. | Kenny RobertsTeam Roberts | 134 |
| 7. | Colin EdwardsYamaha | 124 |
| 8. | Casey StonerHonda LCR | 121 |
| 9. | Toni EliasHonda Gresini | 119 |
| 10. | John HopkinsRizla Suzuki | 116 |
| 11. | Chris VermeulenRizla Suzuki | 98 |
| 12. | Makoto TamadaKonica Minolta | 96 |
| 13. | Sete GibernauDucati | 95 |
| 14. | Shinya NakanoKawasaki | 93 |
| 15. | Carlos ChecaTech 3 | 75 |
| 16. | Randy de PunietKawasaki | 38 |
| 17. | Alex HofmannPramac d'Antín | 30 |
| 18. | James EllisonTech 3 | 26 |
| 19. | Troy BaylissDucati | 25 |
| 20. | Jose Luis CardosoPramac d'Antín | 10 |
| 21. | Kousuke AkiyoshiRizla Suzuki | 3 |
| 22. | Garry McCoyIlmor SRT | 2 |
| 23. | Ivan SilvaPramac d'Antín | 0 |
| 24. | Naoki MatsudoKawasaki | 0 |
| Date | Venue | |||
|---|---|---|---|---|
| 26 Mar '06 | Spain |
Jerez | ||
| 8 Apr '06 | Qatar |
Losail | ||
| 30 Apr '06 | Turkey |
Istanbul Park | ||
| 14 May '06 | China |
Shanghai | ||
| 21 May '06 | France |
Le Mans | ||
| 4 Jun '06 | Italy |
Mugello | ||
| 18 Jun '06 | Catalonia |
Circuit de Catalunya | ||
| 24 Jun '06 | Netherlands |
TT Circuit | ||
| 2 Jul '06 | Great Britain |
Donington Park | ||
| 16 Jul '06 | Germany |
Sachsenring | ||
| 23 Jul '06 | United States |
Laguna Seca | ||
| 20 Aug '06 | Czech Republic |
Brno | ||
| 10 Sep '06 | Malaysia |
Sepang | ||
| 17 Sep '06 | Australia |
Phillip Island | ||
| 24 Sep '06 | Japan |
Motegi | ||
| 15 Oct '06 | Portugal |
Estoril | ||
| 29 Oct '06 | Valencia |
Valencia | ||
| 2006 MotoGP calendar | ||||
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